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Berridge, M. J., Bootman, M. D. & Lipp, P. Calcium – a Life and Death signal. Nature 395, 645–648, https://doi.org/10.1038/27094 (1998).



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Dupont, G., Falcke, M., Kirk, V. & Sneyd, J. Models of Calcium Signalling, vol. 43 of Interdisciplinary Applied Mathematics (Springer International Publishing, 2016).

Jouaville, L. S., Ichas, F. & Mazat, J.-P. Modulation of Cell Calcium Signals by Mitochondria. Bioenergetics of the Cell: Quantitative Aspects 371–376, https://doi.org/10.1007/978-1-4615-5653-4_24 (1998).



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Haworth, R. A. & Hunter, D. R. The Ca({}^{2 })-Induced Membrane Alteration in Mitochondria. II. Nature of the Ca({}^{2 }) Trigger Site. Archives of Biochemistry and Biophysics 195, 460–467 (1979).

Hunter, D. R. & Haworth, R. A. The Ca({}^{2 })-Induced Membrane Alteration in Mitochondria. I. The Protective Mechanisms. Archives of Biochemistry and Biophysics 195, 453–459 (1979).

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Ichas, F., Jouaville, L. & Mazat, J.-P. Mitochondria Are Excitable Organelles Capable of Generating and Conveying Electrical and Calcium Signals. Cell 89, 1145–1153 (1997).

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Hurst, S., Hoek, J. & Sheu, S.-S. Mitochondrial Ca({}^{2 }) and Regulation of the Permeability Alteration Pore. Journal of Bioenergetics and Biomembranes 49, 27–47, https://doi.org/10.1007/s10863-016-9672-x (2017).

Giorgio, V. et al. Dimers of Mitochondrial ATP Synthase Form the Permeability Alteration Pore. Proceedings of the National Academy of Sciences 110, 5887–5892, https://doi.org/10.1073/pnas.1217823110 (2013).

Carraro, M., Checchetto, V., Szabò, I. & Bernardi, P. F-ATP Synthase and the Permeability Alteration Pore: Fewer Doubts, More Certainties. FEBS Letters, https://doi.org/10.1002/1873-3468.13485 (2019).

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Bazil, J. N., Buzzard, G. T. & Rundell, A. E. A Bioenergetic Model of the Mitochondrial Population Undergoing Permeability Transition. Journal of Theoretical Biology 265, 672–690, https://doi.org/10.1016/j.jtbi.2010.06.001 (2010).

Pokhilko, A. V., Ataullakhanov, F. I. & Holmuhamedov, E. L. Mathematical Model of Mitochondrial Ionic Homeostasis: Three Modes of Ca({}^{2 }) Transport. Journal of Theoretical Biology 243, 152–169, https://doi.org/10.1016/j.jtbi.2006.05.025 (2006).

Petronilli, V., Cola, C., Massari, S., Colonna, R. & Bernardi, P. Physiological Effectors Modify Voltage Sensing by the Cyclosporin A-sensitive Permeability Alteration Pore of Mitochondria. Journal of Biological Allure 268, 21939–21945 (1993).

Bernardi, P., Veronese, P. & Petronilli, V. Modulation of the Mitochondrial Cyclosporin A-sensitive Permeability Alteration Pore I. Evidence for Two Separate Me({}^{2 }) Binding Sites with Opposing Effects on the Pore Open Probability. The Journal of Biological Allure 268, 1005–1010 (1993).

Giorgio, V. et al. Ca({}^{2 }) Binding to F-ATP Synthase Beta Subunit Triggers the Mitochondrial Permeability Transition. EMBO letters 18, 1065–1076, https://doi.org/10.15252/embr.201643354 (2017).

Giorgio, V., Guo, L., Bassot, C., Petronilli, V. & Bernardi, P. Calcium and Regulation of the Mitochondrial Permeability Transition. Cell Calcium 70, 56–63, https://doi.org/10.1016/j.ceca.2017.05.004 (2018).

Bertram, R., GramPedersen, M., Luciani, D. S. & Sherman, A. A Simplified Model for Mitochondrial ATP Production. Journal of Theoretical Biology 243, 575–586, https://doi.org/10.1016/j.jtbi.2006.07.019 (2006).

Wacquier, B., RomeroCampos, H. E., González-Vélez, V., Combettes, L. & Dupont, G. Mitochondrial Ca({}^{2 }) Dynamics in Cells and Suspensions. The FEBS Journal 284, 4128–4142, https://doi.org/10.1111/febs.14296 (2017).

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Wacquier, B., Combettes, L., Tran Van Nhieu, G. & Dupont, G. Interplay Amid Intracellular Ca({}^{2 }) Oscillations and Ca({}^{2 }) -stimulated Mitochondrial Metabolism. Scientific Letters 6, https://doi.org/10.1038/srep19316 (2016).

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Broekemeier, K. M., Klocek, C. K. & Pfeiffer, D. R. Proton Selective Substate of the Mitochondrial Permeability Alteration Pore: Regulation by the Redox State of the Electron Transport Chain. Biochemistry 37, 13059–13065 (1998).

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Dargan, S. L. & Parker, I. Buffer Kinetics Shape the Spatiotemporal Patterns of IP({}_{3})-Evoked Ca({}^{2 }) Signals. The Journal of Phisiology 553, 775–788 (2003).

Lu, X., Kwong, J. Q., Molkentin, J. D. & Bers, D. M. Individual Cardiac Mitochondria Undergo Rare Transient Permeability Alteration Pore Openings. Novelty and Significance. Circulation analysis 118, 834–841 (2016).

Agarwal, A. et al. Transient Opening of the Mitochondrial Permeability Alteration Pore Induces Microdomain Calcium Transients in Astrocyte Processes. Neuron 93, 587–605.e7, https://doi.org/10.1016/j.neuron.2016.12.034 (2017).

Hüser, J., Rechenmacher, C. E. & Blatter, L. A. Imaging the Permeability Pore Alteration in Single Mitochondria. Biophysical Journal 74, 2129–2137 (1998).

Briston, T. et al. Mitochondrial Permeability Alteration Pore: Sensitivity to Opening and Mechanistic Dependence on Substrate Availability. Scientific Letters 7, https://doi.org/10.1038/s41598-017-10673-8 (2017).

Oster, A. M., Thomas, B., Terman, D. & Fall, C. P. The Low Conductance Mitochondrial Permeability Alteration Pore Confers Excitability and CICR Wave Propagation in a Computational Model. Journal of Theoretical Biology 273, 216–231, https://doi.org/10.1016/j.jtbi.2010.12.023 (2011).

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Antoniel, M. et al. The Unique Histidine in OSCP Subunit of F-ATP Synthase Mediates Inhibition of the Permeability Alteration Pore by Acidic pH. EMBO letters 19, 257–268, https://doi.org/10.15252/embr.201744705 (2018).

Azarias, G. & Chatton, J.-Y. Selective Ion Changes during Spontaneous Mitochondrial Transients in Intact Astrocytes. Plos One 6, e28505, https://doi.org/10.1371/journal.pone.0028505 (2011).

Selivanov, V. et al. A Model of mitochondrial Ca({}^{2 }) -induced Ca({}^{2 }) Release Simulating the Ca({}^{2 }) Oscillations and Spikes Generated by Mitochondria. Biophysical allure 72, 111–121 (1998).

Makarov, V., Khmelinskii, I. & Javadov, S. Computational Modeling of In Vitro Swelling of Mitochondria: A Biophysical Approach. Molecules 23, 783, https://doi.org/10.3390/molecules23040783 (2018).

Chapa-Dubocq, X., Makarov, V. & Javadov, S. Simple Kinetic Model of Mitochondrial Swelling in Cardiac Cells. Journal of Cellular Physiology 233, 5310–5321, https://doi.org/10.1002/jcp.26335 (2018).

Baranov, S. V., Stavrovskaya, I. G., Brown, A. M., Tyryshkin, A. M. & Kristal, B. S. Kinetic Model for Ca({}^{2 }) -induced Permeability Alteration in Energized Liver Mitochondria Discriminates amid Inhibitor Mechanisms. Journal of Biological Allure 283, 665–676, https://doi.org/10.1074/jbc.M703484200 (2008).

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Eisenhofer, S. et al. A Mathematical Model of Mitochondrial Swelling. BMC Analysis Notes 3, https://doi.org/10.1186/1756-0500-3-67 (2010).

Mojtahedi, M. et al. Cell Fate Decision as High-Dimensional Critical State Transition. Plos Biology 14, e2000640, https://doi.org/10.1371/journal.pbio.2000640 (2016).

Olsen, L. F., Hauser, M. J. B. & Kummer, U. Mechanism of Protection of Peroxidase Activity by Oscillatory Dynamics. European Journal of Biochemistry 270, 2796–2804, https://doi.org/10.1046/j.1432-1033.2003.03655.x (2003).

Tyson, J. J. & Novak, B. Control of Cell Growth, Division and Death: Information Processing in Living Cells. Interface Focus 4, 20130070–20130070, https://doi.org/10.1098/rsfs.2013.0070 (2014).

Martinez-Corral, R., Liu, J., Süel, G. M. & Garcia-Ojalvo, J. Bistable Emergence of Oscillations in Growing Bacillus subtilis Biofilms. Proceedings of the National Academy of Sciences 115, E8333–E8340, https://doi.org/10.1073/pnas.1805004115 (2018).

Elrod, J. W. et al. Cyclophilin D Controls Mitochondrial Pore-dependent Ca({}^{2 }) Exchange, Metabolic Flexibility, and Propensity for Heart Failure in Mice. Journal of Clinical Investigation 120, 3680–3687, https://doi.org/10.1172/JCI43171 (2010).

Collins, T. J. Mitochondria Are Morphologically and Functionally Heterogeneous aural Cells. The EMBO Journal 21, 1616–1627, https://doi.org/10.1093/emboj/21.7.1616 (2002).

Liu, X., Weaver, D., Shirihai, O. & Hajnóczky, G. Mitochondrial ‘Kiss-and-run’: Interplay Amid Mitochondrial Motility and Fusion-fission Dynamics. The EMBO Journal 28, 3074–3089, https://doi.org/10.1038/emboj.2009.255 (2009).

Bhosale, G. & Duchen, M. R. Investigating the Mitochondrial Permeability Alteration Pore in Disease Phenotypes and Drug Screening. Current Protocols in Pharmacology e59, https://doi.org/10.1002/cpph.59 (2019).

Magnus, G. & Keizer, J. Minimal Model of beta-cell Mitochondrial Ca({}^{2 }) Handling. The American Physiology Society 273, C717–C733 (1997).

Cortassa, S., Aon, M., Marbán, E., Winslow, R. L. & O’Rourke, B. An Integrated Model of Cardiac Mitochondrial Energy Metabolism and Calcium Dynamics. Biophysical Journal 84, 2734–2755, https://doi.org/10.1016/S0006-3495(03)75079-6 (2003).

Maldonado, E. M., Taha, F., Rahman, J. & Rahman, S. Systems Biology Approaches Toward Understanding Primary Mitochondrial Diseases. Frontiers in Genetics 10, https://doi.org/10.3389/fgene.2019.00019 (2019).

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